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Allen Institute

Please visit http://alleninstitute.github.io/ for more information.

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  1. AllenSDK AllenSDK Public

    code for reading and processing Allen Institute for Brain Science data

    Jupyter Notebook 392 163

  2. dipde dipde Public

    Numerical solver for coupled population density equations

    Python 26 15

Repositories

Showing 10 of 503 repositories
  • biofile-finder Public

    An open-use web application created for easy access, collaboration, and sharing of datasets through rich metadata search, filter, sort, and direct viewing in common industry applications or in our web-based 3D Volume Viewer.

    AllenInstitute/biofile-finder's past year of commit activity
    TypeScript 21 BSD-3-Clause 9 68 10 Updated Aug 5, 2026
  • MIES Public

    Multichannel Igor Electrophysiology Suite

    AllenInstitute/MIES's past year of commit activity
    IGOR Pro 29 9 279 9 Updated Aug 5, 2026
  • vis Public

    Typescript packages for building big-data visualization tools & components, with examples for a variety of common data types & formats

    AllenInstitute/vis's past year of commit activity
    TypeScript 9 BSD-3-Clause 1 13 11 Updated Aug 5, 2026
  • MultiTaskMPN Public
    AllenInstitute/MultiTaskMPN's past year of commit activity
    Jupyter Notebook 2 1 0 0 Updated Aug 5, 2026
  • neuroglancer Public Forked from google/neuroglancer

    WebGL-based viewer for volumetric data

    AllenInstitute/neuroglancer's past year of commit activity
    TypeScript 0 Apache-2.0 395 0 1 Updated Aug 5, 2026
  • neuron-proofreader Public

    NeuronProofreader is a Python library for automated proofreading of split and merge mistakes in neuron reconstructions.

    AllenInstitute/neuron-proofreader's past year of commit activity
    Python 9 MIT 0 0 3 Updated Aug 5, 2026
  • CCF-MAP Public

    Primer and examples for using templates and atlases in HMBA/BICAN

    AllenInstitute/CCF-MAP's past year of commit activity
    HTML 1 0 0 0 Updated Aug 4, 2026
  • ARBORS Public

    Quantitative comparison of tree morphology

    AllenInstitute/ARBORS's past year of commit activity
    Python 0 0 0 0 Updated Aug 4, 2026
  • arborist Public

    Trees are the most inspiring structures

    AllenInstitute/arborist's past year of commit activity
    Python 0 MIT 0 0 0 Updated Aug 4, 2026
  • ConnectsCommonConnectivity Public

    A repository to organize data models and code for creating a pilot common connectivity matrix for BRAIN CONNECTS

    AllenInstitute/ConnectsCommonConnectivity's past year of commit activity
    Jupyter Notebook 4 MIT 1 0 1 Updated Aug 3, 2026
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