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1. bulk-RNASeq-tissue-differential-expression bulk-RNASeq-tissue-differential-expression Public

   Bulk RNA-seq quality control, TMM normalization and differential expression analysis across human brain, lung and skin tissues using recount and edgeR.

   R

2. gillespie-repressilator-stochastic-simulation gillespie-repressilator-stochastic-simulation Public

   Deterministic and stochastic simulation of a synthetic repressilator and an mRNA-protein gene-expression model using ordinary differential equations and Gillespie SSA.

   Python

3. Homologous-Recombination-Dynamic-Model Homologous-Recombination-Dynamic-Model Public

   Dynamic modelling, network analysis and sensitivity analysis of the homologous recombination DNA repair pathway.

   Jupyter Notebook

4. scRNASeq-mouse-cns-seurat-analysis scRNASeq-mouse-cns-seurat-analysis Public

   Single-cell RNA-seq analysis of a mouse CNS dataset using Seurat, including quality control, MAD filtering, PCA, clustering comparison, marker discovery and cell-type annotation.

   R

5. single-cell-RNASeq-cell-classification single-cell-RNASeq-cell-classification Public

   Comparative machine-learning analysis for clustering and cell classification using single-cell RNA-seq gene-expression data.

   Jupyter Notebook 1