All

23 repositories

clonal-tumor-dynamics
Public
Jupyter Notebook
•0•0•0•0•Updated Aug 18, 2026Aug 18, 2026
FRmatch
Public
Cell type matching in single-cell RNA-sequencing data using FR-Match
r scrna-seq single-cell
r scrna-seq single-cell scrna-seq-analysis cell-type-matching cell-types
R
•
Other
•2•22•0•0•Updated Aug 17, 2026Aug 17, 2026
scFPCDE
Public
Functional PCA-based differential expression analysis for single-cell pseudotime trajectories
R
•
Other
•1•1•0•0•Updated Aug 17, 2026Aug 17, 2026
ribovore
Public
Perl
•
Other
•6•17•3•0•Updated Aug 13, 2026Aug 13, 2026
nsforest-vs-de-marker-selection
Public
Python
•0•0•0•0•Updated Aug 13, 2026Aug 13, 2026
NSForest
Public
A machine learning method for the discovery of the minimum marker gene combinations for cell type identification from single-cell RNA sequencing
machine-learning random-forest decision-trees
machine-learning random-forest decision-trees single-cell marker-genes
HTML
•
Other
•24•70•1•0•Updated Aug 7, 2026Aug 7, 2026
Magic2
Public
Acedb object oriented database engine and AceView/MAGIC RNA_seq pipeline, NCBI/NLM/NIH
C
•5•5•0•0•Updated Jul 29, 2026Jul 29, 2026
Nelson_Lab_Influenza_Strain_Names
Public
Python
•0•0•0•0•Updated Jul 22, 2026Jul 22, 2026
pm4ngs
Public
Project Manager for NGS data analysis
bioinformatics next-generation-sequencing rnaseq
bioinformatics next-generation-sequencing rnaseq ngs-analysis ngs-pipeline cwl-workflow chipseq chipexo
Python
•
Other
•10•31•0•13•Updated Jul 10, 2026Jul 10, 2026
cwl-ngs-workflows-cbb
Public
A set of CWL tools and workflows used by NCBI Computational Biology Branch for NGS data analysis
ngs ngs-analysis ngs-pipeline
ngs ngs-analysis ngs-pipeline cwl-workflow
Common Workflow Language
•
Other
•11•29•0•0•Updated Jun 29, 2026Jun 29, 2026
vadr
Public
Viral Annotation DefineR: classification and annotation of viral sequences based on RefSeq annotation
Perl
•
Other
•27•120•10•0•Updated Jun 18, 2026Jun 18, 2026
CorpusBenchmarking
Public
Python
•0•3•0•0•Updated Jun 5, 2026Jun 5, 2026
ctcae-ae-tracking
Public
Python
•0•1•0•0•Updated Mar 9, 2026Mar 9, 2026
TPMCalculator
Public
TPMCalculator quantifies mRNA abundance directly from the alignments by parsing BAM files
rna-seq ngs tpm
rna-seq ngs tpm
C++
•
Other
•34•138•15•0•Updated Jan 28, 2026Jan 28, 2026
gtax
Public
GTax python package provides tools for the creation of the GTax sequence-based database. This database includes one assembly per organism deposited in the NCBI …
Python
•
Other
•4•7•2•0•Updated Jan 28, 2026Jan 28, 2026
BAMscale
Public
BAMscale is a one-step tool for either 1) quantifying and normalizing the coverage of peaks or 2) generated scaled BigWig files for easy visualization of common…
C
•
Other
•17•74•1•1•Updated Dec 4, 2024Dec 4, 2024
histonedb
Public
JavaScript
•10•3•0•4•Updated Apr 5, 2024Apr 5, 2024
pm4ngs-chipseq
Public
Jupyter Notebook
•
Other
•4•0•1•0•Updated Jun 21, 2023Jun 21, 2023
pm4ngs-transcriptome-annotation
Public
Jupyter Notebook
•
Other
•1•1•0•0•Updated Oct 25, 2021Oct 25, 2021
pm4ngs-chipexo
Public
Jupyter Notebook
•
Other
•3•1•0•0•Updated Jul 7, 2021Jul 7, 2021
pm4ngs-rnaseq
Public
Jupyter Notebook
•
Other
•3•0•0•0•Updated Jul 7, 2021Jul 7, 2021
cloud-transcriptome-annotation
Public
Time and cost comparison on GCP and AWS for transcriptome annotation
aws jupyter-notebook gcp
aws jupyter-notebook gcp transcriptome-annotation
Jupyter Notebook
•
Other
•5•3•0•0•Updated Nov 12, 2020Nov 12, 2020
dcode-cape
Public
C++
•
Other
•7•1•0•0•Updated May 23, 2020May 23, 2020

ProTip! When viewing an organization's repositories, you can use the props. filter to filter by custom property.

Navigation Menu

NLM Division of Intramural Research

All

All

23 repositories

clonal-tumor-dynamics

FRmatch

scFPCDE

ribovore

nsforest-vs-de-marker-selection

NSForest

Magic2

Nelson_Lab_Influenza_Strain_Names

pm4ngs

cwl-ngs-workflows-cbb

vadr

CorpusBenchmarking

ctcae-ae-tracking

TPMCalculator

gtax

BAMscale

histonedb

pm4ngs-chipseq

pm4ngs-transcriptome-annotation

pm4ngs-chipexo

pm4ngs-rnaseq

cloud-transcriptome-annotation

dcode-cape

All

All

Repositories list

23 repositories