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BUG: when providing a gene list file, the bed file is not correctly generated
enhancementNew feature or requestNew feature or requestStatus: Open.#57 In scholl-lab/vcf-filtering;Feature request: Add a Snakemake Script
enhancementNew feature or requestNew feature or requestStatus: Open.#56 In scholl-lab/vcf-filtering;Feature Request: Add Option to Generate Subset BAMs for Screenshots and Variant Confirmation
enhancementNew feature or requestNew feature or requestStatus: Open.#55 In scholl-lab/vcf-filtering;Bug: Empty Outputs in Tumor-Only Analysis with Numbered GEN[1] Fields
bugSomething isn't workingSomething isn't workingStatus: Open.#54 In scholl-lab/vcf-filtering;Bug: Fields with Commas Converted to Numbers in Excel
bugSomething isn't workingSomething isn't workingStatus: Open.#53 In scholl-lab/vcf-filtering;Bug: Improve Debug Level Implementation for Clarity and Consistency
bugSomething isn't workingSomething isn't workingStatus: Open.#52 In scholl-lab/vcf-filtering;Bug: Fixed output separator causing Excel conversion issues
bugSomething isn't workingSomething isn't workingStatus: Open.#50 In scholl-lab/vcf-filtering;Bug: Samples file required even if empty, causing pipeline failure
bugSomething isn't workingSomething isn't workingStatus: Open.#49 In scholl-lab/vcf-filtering;Bug: Incorrect output file format when specifying XLSX output without output file
bugSomething isn't workingSomething isn't workingStatus: Open.#48 In scholl-lab/vcf-filtering;Bug: Genotypes Not Added in replace_gt_with_sample.sh When Using Probands File
bugSomething isn't workingSomething isn't workingStatus: Open.#47 In scholl-lab/vcf-filtering;Feature request: Change workflow to allow a unified sample file
enhancementNew feature or requestNew feature or requestStatus: Open.#43 In scholl-lab/vcf-filtering;Tests: Add tests to all scripts and add test data
enhancementNew feature or requestNew feature or requestStatus: Open.#42 In scholl-lab/vcf-filtering;