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1. MetalNet MetalNet Public

   metal binding prediction using coevolution

   Jupyter Notebook 2 3

2. mfDCA mfDCA Public

   reimplementation of mfDCA in python

   Jupyter Notebook 12 3

3. 3D_shape_alignment-rotation 3D_shape_alignment-rotation Public

   This is the implementation to Construct transform matrix to align any same shapes(such as triangle, tetrahedron..) together.

   Jupyter Notebook

4. GREMLIN_PYTORCH GREMLIN_PYTORCH Public

   a pytorch version for GREMLIN, used to predict the protein contacts by coevolution method.

   Jupyter Notebook 17 3

5. GREMLIN_CPP GREMLIN_CPP Public

   Forked from sokrypton/GREMLIN_CPP

   GREMLIN - learn MRF/potts model from input multiple sequence alignment! Implementation now available in C++ and Tensorflow/Python!

   Jupyter Notebook 2

6. operator-graphs-for-protein-intelligence operator-graphs-for-protein-intelligence Public

   **A Mathematical Language for Energy, Probability, and Computation** An evolving scientific monograph on the mathematical objects that sit behind protein sequence models, graphical models, neural a…

   Python 1